I recently found an easy way to take care of this without having to sand below the pits and redo everything. When I get small white spots like that, I take a q-tip with acetone and dab the white spot. That will generally turn the spot clear again (some bigger spots take a small bit of rubbing too) and allow you to continue adding coats until they're filled, then finish like normal. This trick has saved me a LOT of time while learning CA finishes.