Thank you all for your advice. I overcoated it and finished out the pen and can see the result. I agree with John T and Dogrunner that I would have been better off to sand it back to 800 (dry) and begin again. There was not just one spot, but several splotchy areas. Were this was a nicer wood blank, I would have been more apt to try to fix it the right way. I probably would also have sanded more carefully in that case.
This was an experiment pen -- but aren't they all so far in my early career
! I wanted to see if I could use a hole saw drill bit (for a door knob) to create inlay. Inlay, is that even the right term? Segment? I also saw someone else here using card stock and threw some of that in there too. It blew apart when I went to drill it out because I used epoxy glue instead of thin CA. I glued it back up with thin CA, and finished it out.
In spite of all that, I'm going to put it out there that this is my best pen to date. It has a nice shape and a nice shine and feels good in my hand. I like the color tone of the stripes and the black cardstock sets it off. I'm proud of this ink pen.
Lessons Learned:
Turn down the speed when sanding CA (I was ~1,500).
More coats of CA to give me room for error.
Intermittent CA sanding rather than all at the end.