Awww see that brings a whole other set of things. a three phase motor is simple inside. It only has the windings and the stator. Typically not a lot of other parts like start windings. But the inverter can have issues. I am not familiar with the particular inverter that is used, but I can tell you that a lot of the inverters read the amperage all the time and if the sense a change in amperage can adjust the speed to keep it consistant. If that is the case, I am thinking you could have a wiring connection issue, such as a loose wirenut, terminal or whatever method they use for connections and the electronics are trying to adjust for that.
I have to say, what I would most likely do as you seem to have done so much troubleshooting already, is to check all connections, and if they are good, make a call to Jet Tech Support.
Knowing you have a 3 phase motor, it is not nearly as likely that you have a bearing issue. Three phase motors are just built better typically.
Sorry I was not more help. if you were lived in the area I would offer to stop over and help you troubleshoot some more, but thinking, GA to CO is a bit far. LOL