As I thought about this, there IS a second option:
Get out some 100-200 grit sandpaper, lower your lathe speed to about 1000 rpm or less and sand out the marks. This will also PROVE to you that they are not in the blank, since they won't occur with sandpaper.
Sanding at this level will make scratches that will have to be removed, so the process becomes LONGER as a result - but it IS foolproof. Remember, you will have to work up in 50-60 grit increments until you get to about 400, otherwise you will NOT fully remove the 150 grit scratches. Stop the lathe and check occassionally. One Black pen took me THREE TIMES as long as most pens do, just last night because the scratches would NOT come out (started at 240 grit, but I usually start at 320, the difference was amazing - to me!!)